A lot of the work of our lab involves accessing, wrangling, and re-distributing public data resources. Here are a few resources that may be good to know about.

  • HMP: Tips from the Huttenhower lab on making use of data from the Human Microbiome Project
  • BiocInterfaces: tools by Marcel Ramos to help interface TCGA data with Bioconductor. Useful little utility functions like a TCGA barcode translator.
  • TCGACodeTables: A fork of TCGA barcode tables, which are no longer available from the decomissioned TCGA data portal.
  • ExperimentHub: A system for distributing experimental data through Bioconductor.

Waldron Lab

Waldron Lab Research Website